orphan:

prepareALLSortsInput · 1 contributor · 1 version

No documentation was provided: contribute one

Quickstart

from janis_bioinformatics.tools.oshlack.prepareallsortsinput import PrepareALLSortsInput_0_1_0

wf = WorkflowBuilder("myworkflow")

wf.step(
    "prepareallsortsinput_step",
    PrepareALLSortsInput_0_1_0(
        inps=None,
    )
)
wf.output("out", source=prepareallsortsinput_step.out)

OR

  1. Install Janis
  2. Ensure Janis is configured to work with Docker or Singularity.
  3. Ensure all reference files are available:

Note

More information about these inputs are available below.

  1. Generate user input files for prepareALLSortsInput:
# user inputs
janis inputs prepareALLSortsInput > inputs.yaml

inputs.yaml

inps:
- inps_0
- inps_1
  1. Run prepareALLSortsInput with:
janis run [...run options] \
    --inputs inputs.yaml \
    prepareALLSortsInput





 Information
 ------------


 :ID: ``prepareALLSortsInput``
URL:No URL to the documentation was provided
Versions:v0.1.0
Container:python:3.8.1
Authors:Jiaan Yu
Citations:None
Created:2020-09-21
Updated:2020-09-21

name type documentation ====== ====== =============== out csv ====== ====== ===============

name type documentation =============== ======================= =============== inps Array<File> labels Optional<Array<String>> output_filename Optional<String> fusion_caller Optional<String> =============== ======================= ===============